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The Ultimate eCheck FAQ: 20 Common Questions Answered

By |Published On: July 14th, 2021|

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In a digital age where convenience is key, online transactions have become all the rage for businesses that want to improve and accelerate their payment process. Since many businesses have changed the way they buy and sell goods over the past few years, the demand for paper payments continues to decline.

Thanks to this shift, one of the most popular online payment methods now involves the use of electronic checks, also known as eChecks. So, what are eChecks? How do consumers pay with them? Are they safe to use? Which businesses should incorporate them?

With any new technology, there will always be questions. To help businesses and consumers better understand eChecks, this article will provide in-depth answers to the most frequently asked questions.

Here are 20 commonly asked questions (and answers) about eChecks:

  1. What are eChecks?
  2. How does processing an eCheck work?
  3. What are eCheck processing fees?
  4. How do eCheck and credit card processing costs compare?
  5. What payments can be made with eChecks?
  6. How do eChecks, EFT, and ACH payments differ?
  7. How do paper checks and eChecks differ?
  8. How long does the eCheck clearing process take?
  9. Are eChecks secure and safe to use?
  10. How do I send an eCheck?
  11. When do eChecks process?
  12. What happens if my eCheck is rejected?
  13. How do I cancel an eCheck?
  14. What are the benefits of using eCheck payments?
  15. What are the drawbacks of using eCheck payments?
  16. Can customers submit chargebacks on eChecks?
  17. Can eChecks increase revenue for merchants?
  18. How does my business set up an eCheck merchant account?
  19. Which businesses should accept eCheck payments?
  20. Which businesses should not accept eCheck payments?

Now, let’s break down each question and answer to provide you with the most comprehensive knowledge of eChecks…

What are eChecks?

Simply put, an eCheck is a digital version of a paper check that’s used to make a payment online or using an Automated Clearing House (ACH) network.

With an eCheck, funds are electronically withdrawn from the associated checking account and deposited into the receiving party’s bank account.

How does processing an eCheck work?

The purpose of eChecks is to provide a convenient way to accept payments. Therefore, this entire electronic process is streamlined into four simple steps:

  1. Request transaction authorization. The customer making the payment must authorize the amount requested by the recipient to be withdrawn from his or her account. Payments can be approved through a signed order form, recorded voice approval, or online payment form.
  2. Set up the payment. Once the customer authorizes the payment, the merchant will initiate the payment process by inputting the associated financial data (checking account, routing number, etc.) into the online payment gateway (processing software).
  3. Finalize the transaction. After the financial information is received and verified by the payment gateway (processor), the merchant “saves” and “submits” the payment to their bank. The payment is then sent to the ACH network to begin the eCheck transaction process.
  4. Confirmation of payment. Lastly, the eCheck transaction amount is withdrawn from the customer’s checking account, deposited into the business’s bank account, and a payment confirmation receipt is sent to the customer.

Gone are the days of planning a trip to the bank. With these four simple steps, eChecks provide a more efficient way to make payments. This, along with many other perks, has contributed to eChecks’ growth in popularity. One of the largest benefits is the processing costs they offer.

What are eCheck processing fees?

When processing any online or in-person transaction, there will always be certain fees involved, and eChecks are no different. These fees are important because they can dictate which payment methods merchants accept and the payment system they use.

eCheck processing fees

While eCheck processing rates depend on the business, provider, and other variables, they’re generally lower in cost in comparison to other payments. eCheck transactions typically include fixed or flat rates that fluctuate between zero to one percent of the total amount. An average eCheck fee can range anywhere from $0.30 to $1.50 per transaction.

Businesses should look for other charges when setting up eCheck payments, like:

  • Application fees
  • Monthly fees
  • Return and chargeback fees
  • Verification fees
  • Rental fees
  • Termination fees
  • High-risk fees

Luckily, there are reliable, transparent online payment gateways that actively work to reduce processing rates by accepting eChecks, credit card payments, and more.

How do eCheck and credit card processing rates compare?

When comparing eCheck and credit card rates, eCheck transactions cost significantly less to process. One of the main reasons for this can be seen in the difference in networks and the fees associated with each.

With an eCheck payment, the transaction is usually processed by an ACH network and includes the basic fees mentioned in the section above. By contrast, credit card payments are processed by card networks, which charge higher fees than ACH networks. The differences in rates are mainly due to the types of payments being processed in each network — small vs. large transactions, one-time vs. recurring, low-risk vs. high-risk, etc.

eChecks tend to incur a much lower risk than credit card payments. This is because the card-issuing bank assumes the liability of the funds during a credit card transaction and has to account for potential fraud and chargebacks. With eChecks, the consumer or party paying is liable, and payment can only be restricted by the funds in the associated bank account. Thanks to the reduced risk of eCheck transactions, their associated fees are much lower.

What payments can be made with eChecks?

eChecks can be used for a variety of transactions. They, therefore, offer a lot of versatility to both businesses and consumers.

The lower processing fees associated with eChecks have made them a popular payment method for big-ticket items, recurring payments, or your everyday one-time purchases.

Some of the most common eCheck payments include:

  • Subscription-based services or membership plans
  • Mortgage or monthly rental payments
  • Financing and automatic payments or loan repayments
  • Legal retainers
  • Credit card payments

While these tend to be the most popular transactions, there are still many other ways your business can take advantage of eChecks. However, before you explore these options, it’s important to first understand the difference between eChecks and other payments.

How do eChecks, EFT, and ACH payments differ?

With the list of online payments constantly growing, it’s not uncommon to mix up the different methods or misunderstand how each works. eChecks, electronic funds transfer (EFT), and ACH payments are some of the most frequently confused methods.

To help you gain a better understanding of how each payment differs, here’s a quick breakdown:

EFT payments

An EFT payment, sometimes referred to as an ePayment, is the electronic transfer of funds from one bank account to another using an online network. The term “EFT payment” is overarching and covers a broad number of different transactions. This type of payment typically does not include any cash or involvement from bank employees.

EFT payments can include transactions like:

  • Wire transfers
  • eChecks
  • ATM withdrawals
  • eWallets
  • ACH transfers
  • Direct deposits
  • Electronic benefits payments

As you can see, both ACH and eCheck payments are classified as EFT payments.

ACH payments

The Automated Clearing House (ACH) network is the batch processing system that processes and transfers funds between merchants’ and consumers’ financial institutions. When using an ACH network, merchants process payments by inputting the customer’s associated bank account information.

Automated Clearing House network

The term ACH transfer or payment simply refers to a type of electronic bank-to-bank transaction that’s processed through the ACH network. These payments are set up through banks or financial institutions that allow both merchants and customers to send and receive payments. ACH payments are processed as direct deposits or direct payments. Some examples of these payments are paychecks, interest payments, social payments apps (Venmo), etc.

ACH payments are processed using two methods:

  • ACH debit transactions: Money is “pulled” from an account (bill payment) — the consumer or merchant account that’s receiving the payment initiates the transaction.
  • ACH credit transactions: Money is “pushed” to an account (direct deposit) — the consumer or merchant account making the payment initiates the transaction.

All ACH transactions fall under the category of EFT payments because they’re electronically processed. However, not all EFT payments are classified as ACH payments unless processed through the ACH network.


An eCheck is considered both an ACH debit and EFT payment because it uses electronic funds that are transferred through an Automated Clearing House network.

eChecks are ACH debits because they allow for authorized payments to be pulled directly from the checking account of a merchant, consumer, or other organization. eChecks can also be used for batch processing.

eChecks are EFT payments because they involve the electronic transfer of funds from one bank account to another using an online network.

It’s not unusual to hear the terms ACH and eCheck interchanged because they’re so similar in functionality. Despite these similarities, they differ in that ACH is the network used to process payments and eChecks are the actual payments being processed.

How do paper checks and eChecks differ?

While paper checks and eChecks essentially function the same way, there are a few notable differences between the two.

It’s important to first point out that eChecks are derived from paper checks. The most obvious distinction is seen in their technology (or lack thereof). eChecks are used for online transactions, whereas paper checks are used for in-person transactions as a physical form of payment.

Some other key differences between eChecks and paper checks include:

  • eChecks process much faster than paper checks since they require fewer steps
  • eChecks are safer to use than paper checks and come with more security features (authent