Integrations/QuickBooks

QuickBooks Payment Processing Integration

Get paid faster, cut processing costs, and eliminate AR busywork — built natively for QuickBooks Desktop & Online. Users save up to 43% each month on processing costs.

how our quickbooks integration works

6+ hours

saved each week on AR

40% decrease

in payment processing costs

3x reduction

is days sales outstanding

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Featured Highlights

Running a credit card transaction inside of QuickBooks

Run transactions natively inside QuickBooks

Process credit cards, debit, and ACH payments directly on QuickBooks invoices and sales orders. Authorize, capture, void, or refund without leaving QuickBooks — and watch payments post to the general ledger automatically.

A customer payment portal shown syncing invoices in from QuickBooks

Get paid faster with payment links & a customer payment portal

Send secure payment request links directly from QuickBooks invoices. Sync outstanding balances to a self-service portal where customers can pay on their own time — no phone calls, no paper checks.

Surcharging module to pass credit card fees to customers

Significantly cut payment processing costs

Reduce your credit card processing costs significantly with level 3 processing rates and surcharging options.

How EBizCharge Works with QuickBooks

EBizCharge is a native QuickBooks payment processing integration built for B2B AR teams. Unlike bolt-on gateways, it runs entirely inside QuickBooks — so payments post to the general ledger automatically, with no manual entry required.

Run transactions without leaving QuickBooks

Key features

Accept payments inside QuickBooks

  • Process credit card and ACH payments directly on QuickBooks invoices and sales orders
  • Connect an EMV device for in-person payments synced to QuickBooks
  • Accept Visa, Mastercard, Amex, Discover, debit, and ACH/eCheck
  • Authorize, capture, void, or refund right from QuickBooks — no tab switching
  • Payments auto-post to open invoices and the general ledger instantly

Get paid without chasing

  • Send secure payment request links via email directly from QuickBooks
  • Sync invoices to a branded self-service customer payment portal
  • Embed “Pay Now” buttons on QuickBooks invoices and sales orders
  • Automate payment reminders for outstanding balances
  • Automatic retry logic for failed or declined transactions
Quickbooks Automate manual payment tasks

Automate AR tasks at scale

  • Batch process payments for multiple customers in one action
  • Auto-charge statement balances during a pay period
  • Send bulk payment requests in a single click
  • Automated general ledger posting — zero manual reconciliation
  • Schedule recurring payments or installment plans

Enterprise grade security built for QuickBooks

  • Securely save customer payment methods for future use
  • Request payment details via a secure, branded link
  • All card data stored off your servers — reduces your PCI scope
  • Tokenization and encryption on every transaction
  • Proactive alerts for expiring customer payment methods
Securely manage customer payment methods quickbooks

Reduce processing costs each month

  • Level 2 & Level 3 data processing for B2B interchange optimization
  • Surcharging program to legally pass processing fees to customers
  • Cash discount program to incentivize non-card payments
  • Competitive base rates for high-volume B2B merchants

Accept payments from a mobile device

  • Sync the EBizCharge mobile app with QuickBooks
  • Search and pay customer invoices from the mobile app
  • Generate invoices on the go and collect payment on the spot
  • Use a card reader or scan card details with your device camera

Frequently asked questions

While QuickBooks does offer basic built-in payment processing, it lacks the advanced features growing businesses need. EBizCharge fills that gap — it connects directly to QuickBooks so your team can accept credit cards, debit cards, and ACH payments with more flexibility, lower costs, and greater control, without ever leaving the platform.

With EBizCharge’s QuickBooks integration, you can accept credit and debit card payments (Visa, Mastercard, Amex, Discover) directly inside QuickBooks. Payments are processed from the invoice or sales order screen, and they auto-post to the correct record — no manual entry or reconciliation needed.

EBizCharge is widely regarded as one of the top payment integrations for QuickBooks. Unlike generic processors that use a simple API connection, EBizCharge is purpose-built for QuickBooks — meaning payments are fully embedded in your workflow, data syncs automatically, and your AR team never has to touch a separate system. It also supports Level 2 and Level 3 processing, ACH, surcharging, and a self-service customer payment portal.

Yes. EBizCharge supports ACH/eCheck processing natively within QuickBooks. Your team can collect bank transfers directly from the invoice screen, and payments post automatically — just like credit card transactions. ACH is especially popular for B2B companies looking to reduce processing costs on large invoices.

Yes. EBizCharge supports Level 2 and Level 3 data processing for B2B and B2G transactions inside QuickBooks. By passing the additional line-item detail required for Level 3, eligible transactions qualify for lower interchange rates — which can translate to meaningful savings for businesses processing significant corporate or purchasing card volume.

Yes. EBizCharge is PCI DSS Level 1 certified — the highest level of payment security compliance. It also uses point-to-point encryption (P2PE) and tokenization, which reduces your business’s PCI scope by ensuring sensitive card data is never stored on your systems.

Most businesses are up and running with EBizCharge in QuickBooks within a few days. EBizCharge has a dedicated implementation and support team based in Irvine, CA that handles the setup process and is available by phone or email at no additional cost. The timeline can vary depending on your QuickBooks configuration, but there’s no lengthy development work required — it’s a pre-built, certified integration.

Why EBizCharge?

  • All-in-one solution

  • US-based support

  • Significant cost savings

  • $0 Hidden fees

  • $0 Installation

  • Dedicated account manager

  • 20+ years in service

Auburn manufacturing customer logo

“The software has really helped our customer services staff [and] saved us a lot of time. One of the best assets is that we don’t have to store the credit card information ourselves.

Joy Campbell, Auburn Manufacturing
Accounting and IT Manager